Package index

Data Preparation

Functions for preparing and cleaning occurrence data.

prepare_bean()

Prepare data for environmental thinning

Thinning Logic

Functions for addressing sampling bias by thinning in environmental space (E-space).

find_env_resolution()

Find an objective environmental grid resolution

thin_env_nd()

Thin occurrence data in n-dimensional environmental space

thin_env_center()

Deterministic centroid

plot_bean()

Visualize n-dimensional environmental thinning results

Niche delineation

Functions for fitting an environmental-niche ellipsoid.

fit_ellipsoid()

Fit an environmental niche ellipsoid

Datasets

Example data shipped with the package.

occ_data_raw

Raw Rusa unicolor occurrence data

origin_dat_prepared

Cleaned and scaled occurrence data

thinned_stochastic

Stochastically thinned environmental data

thinned_deterministic

Deterministically thinned environmental data

origin_ellipse

Fitted niche ellipsoid for Rusa unicolor